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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaaccttctattaaatttaacatcaaactaattttttttatcatcacatcttgaatttgtcacattacatctccttttcttgtttaactagtgaacctcgtattctaatgttgtattcttttataccctaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAGTTGGCTTTGCATGATGATAGCATTTGGGTTG

Basic information

species Glycine max
transcript GLYMA19G42990.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------gtgagtgcaaccttctattaaatttaacatcaaac---taattttttttatcatcacatcttgaatttgtcacattacatctccttttcttgtttaactagtgaacctcgtattctaatgttgtattct-tttataccctaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAGTTGGCTTTGCATGATGATAGCATTTGGGTTG
                                                     |   |      | | ||||  |||  | |  | |   | || |||| |  | |      ||   | | || |  |   |||| |||      ||     |  |  ||| |  | | |||    ||||| ||||||| || |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||  |||| |||||||||||| |||| |||| ||
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtttaactagtgaacctcgtattctaatgttgtattcttttataccctaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAGTTGGCTTTGCATGATGATAGCATTTGGGTTG
                         ttctaat  putative branch site (score: 2)
                                      ttcttttataccct  putative PPT
                                 ttgtattcttttata  TA-rich tract