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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacaattatagtccatccaaatatgtcagtaaattgcagcttcacaaaattcatttctgttcttttggtcttatctgcagAAAGGTTCTCAGCATATATGTGTAGAACAACCTGGCGTACATGAATTTCATTTTGTTGACTCGTGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA

Basic information

species Glycine max
transcript GLYMA19G40520.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40520.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 3'ss of exon 17
-----------------------------------------gtacaacaattatagtcca---tccaaatatgtcag-taaattgc-agcttcacaaaattcatttctg----ttcttttggtctt--atctgcagAAAGGTTCTCAGCATATATGTGTAGAACAACCTGGCGTACATGAATTTCATTTTGTTGACTCGTGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA
                                          || ||| |||||||  ||   | || |  | |  | |||| ||  |  |||| |   | |||||        |||||   ||||  | ||||||||||| |  |||||||| |||||||||   ||||| ||||||||| | || ||||||||||| ||||| ||||||||||| || ||  |||| ||| |||
gttatctccatccattaataatctcattatttgaaattttcatataactattataggacactgttcacacctctatgctaaaatgtgaaattcatagtctgcattttcagtttctctttccttctttgaactgcagAAAGGCTTGCAGCATATTTGTGTAGAATCTCCTGGAGTACATGAACTCCACTTTGTTGACTCATGTATTTTCTTTGGGAGCTCGTCGATGAAGATTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtaaattgcagcttcacaaaattcatttctgttcttttggtcttatctgcagAAAGGTTCTCAGCATATATGTGTAGAACAACCTGGCGTACATGAATTTCATTTTGTTGACTCGTGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATA
                                           tcttatct  CT-rich tract
                    aaaattcattt  TA-rich tract