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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgttaaacttttaaaggaatagcttatatattgtgtattctcgccttaatttttgttcctgattttagttttactggttgtggattactttcaattttagGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATG

Basic information

species Glycine max
transcript GLYMA19G39210.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898661|gb|BE607629.1|BE607629
EST:     CAGCAAGTTGGTTCACCAGTTGCCACTG                         GTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAG
genomic: CAGCAAGTTGGTTCACCAGTTGCCACTGgtaatgtgtt ... tcaattttagGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAG
EST: gi|18732588|gb|BM527126.1|BM527126
EST:     CACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTG                         GTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAG
genomic: CACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGgtaatgtgtt ... tcaattttagGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatttttgttcctgattttagttttactggttgtggattactttcaattttagGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATG
           tcctgat  putative branch site (score: 3)
                                       ttactttc  putative PPT
                                      attactttcaatttta  TA-rich tract