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gtatccttccaagaattctaattccaatgtttgattttcaaattttctacttgttaacgtctacaggcatgttgaaatcatgaaatacattggtccttttcagtgcagcatgtgaaataaatgttatagtttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCAT
species | Glycine max |
transcript | GLYMA19G35710.1 |
intron # | 9 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAAGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|254335061|gb|GR844846.1|GR844846
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|7589208|gb|AW704987.1|AW704987
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|254335060|gb|GR844845.1|GR844845
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|151398751|gb|EV268622.1|EV268622
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAAGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|208076580|gb|GD873969.1|GD873969
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTT-GAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGACAGTAAACGACTTTTTGCCTGCCEST: gi|15000402|gb|BI321216.1|BI321216
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTG-CAGTAAACGACTTTTTGCCTGCC
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTEST: gi|120533838|gb|EH261971.1|EH261971
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
EST: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGNNNNNNNGAAGACT ACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
genomic: AGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTgtatccttcc ... aaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCT
cagtgcagcatgtgaaataaatgttatagtttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCAT
ttccttcat putative branch site
aaataaatgttatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttccaagaattctaattccaatgtttgattttcaaattttctacttgttaacgtctacaggcatgttgaaatcatgaaatacattggtccttttcagtgcagcatgtgaaataaatgttatagtttgttttccttcataaaggatttagACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC