1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttatttcctcaaaataagttagaccaaacatccactaagtttgttacttacaaagagaaaaaaattgttttatgttttctaattgaatatttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGCAA
species | Glycine max |
transcript | GLYMA19G30450.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAGAGGACTTGGGTGCTTCACCAATATGGGTATTTAATAATG GTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGCEST: gi|8283326|gb|BE020887.1|BE020887
genomic: CTTGCAGAGGACTTGGGTGCTTCACCAATATGGGTATTTAATAATGgtaatttatg ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGC
EST: CTTGCAGAGGACTTGGGTGCTTCACCAATATGGGTATTTAATAATG GTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGC
genomic: CTTGCAGAGGACTTGGGTGCTTCACCAATATGGGTATTTAATAATGgtaatttatg ... ttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGC
acttacaaagagaaaaaaattgttttatgttttctaattgaatatttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGCAA
tttcgtttt CT-rich tract
agaaaaaaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttcctcaaaataagttagaccaaacatccactaagtttgttacttacaaagagaaaaaaattgttttatgttttctaattgaatatttcgttttagGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGCAA
- - - cctcaaa
- - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa