1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttttattgagtctagcaagagaatatgtctgctgcactaatttgaccataaagtatttctcctatttttcatccaatatttgtcggaatttgattttgggtaatttactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGGATCTGCTAAAGAACATCAGAACTCAAGTCTTGCTGAAGCTCATCAAAC
species | Glycine max |
transcript | GLYMA19G30100.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGEST: gi|193544145|gb|FK499390.1|FK499390
genomic: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAG
EST: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGEST: gi|208080216|gb|GD878084.1|GD878084
genomic: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAG
EST: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGEST: gi|193637289|gb|FK579398.1|FK579398
genomic: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAG
EST: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAG AGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAG
genomic: TAGCAGCCTATCAGCGTAATGAAATATTGGAATTTGAGAAAATCTTGAAGgtacttttat ... tactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAG
cctatttttcatccaatatttgtcggaatttgattttgggtaatttactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGGATCTGCTAAAGAACATCAGAACTCAAGTCTTGCTGAAGCTCATCAAAC
atttgat putative branch site (score: 5)
tttactttcc putative PPT
aatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttattgagtctagcaagagaatatgtctgctgcactaatttgaccataaagtatttctcctatttttcatccaatatttgtcggaatttgattttgggtaatttactttccagAGTAACAGAAGAACCATCATGGATGATCCATTTATCAGAAACTACATTGAGGATCTGCTAAAGAACATCAGAACTCAAGTCTTGCTGAAGCTCATCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA