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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgatttaaggcttcatttaatgtacttaacctcatgtcactgctgtaattgtgtaatgtctgctttgaatcagtggatgatagatagctcattatgcattttggcctatgcatgttttaattcaattttggtattatgtaacttctagtgtctactgtttaattgaggatgttgttttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGATTTTCAATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGAGTGA

Basic information

species Glycine max
transcript GLYMA19G29100.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12489806|gb|BG043327.1|BG043327
EST:     CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
genomic: CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGgttgtgattt ... ttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
EST: gi|20497725|gb|BQ272655.1|BQ272655
EST:     CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
genomic: CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGgttgtgattt ... ttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
EST: gi|20811448|gb|BQ295926.1|BQ295926
EST:     CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
genomic: CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGgttgtgattt ... ttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGA
EST: gi|22540928|gb|BU090771.1|BU090771
EST:     CCCCTCCCCAACCTTCTCGGCCATCGNTAAGGGACATTCAAATGCAACAG                         GGAAAGAAACAACAAAGCCTTTCACACAGTTCAAAGACTACAACAGC
genomic: CCCCTCCCCAACCTTCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGgttgtgattt ... ttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgtaacttctagtgtctactgtttaattgaggatgttgttttaaatacagGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTACAACAGCTGGATTTTCAATCCCTACCTGTCAAGGCTCGCCGTCCGAAACAACCGGAGTGA
                                        ttgtttt  CT-rich tract
                                     atgttgttttaaata  TA-rich tract