1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cacacacacacacacactgacacacgcatgcatgcatgcacacactctcacatgtaatttaaggatgatctgggttgactatttgttgttaatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCGATTTGTCTCCTGGCCAACCATTACAACCTAATCAACCTACTGGCAACC
species | Glycine max |
transcript | GLYMA19G28580.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCTCATAAATGAAGATGATTCANAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCEST: gi|193705074|gb|FK644018.1|FK644018
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAA-CTTCCAGGGATATCEST: gi|27426935|gb|CA938455.1|CA938455
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCEST: gi|193536910|gb|FK492320.1|FK492320
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCEST: gi|308098428|gb|HO760169.1|HO760169
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCEST: gi|11687486|gb|BF595162.1|BF595162
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCEST: gi|7232311|gb|AW567668.1|AW567668
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
EST: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCT GCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
genomic: ATCTCATAAATGAAGATGATTCAAAATCAGCATTTGCTTTAGATTCTCCTgtatgctaac ... aatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATC
tctcacatgtaatttaaggatgatctgggttgactatttgttgttaatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCGATTTGTCTCCTGGCCAACCATTACAACCTAATCAACCTACTGGCAACC
tgttaat putative branch site (score: 3)
tatttgttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacacacacacacactgacacacgcatgcatgcatgcacacactctcacatgtaatttaaggatgatctgggttgactatttgttgttaatgctgcagGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATCGATTTGTCTCCTGGCCAACCATTACAACCTAATCAACCTACTGGCAACC
-acacaca
- - - - - - - - - gacacac
- - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt