1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caagattttattccccttttataaaaagaaatattcttatataattaaatggagagtatatctttcgatttgaaaagtcgactccattcatacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCAAGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTA
species | Glycine max |
transcript | GLYMA19G22520.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAG-TTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|7639784|gb|AW734099.1|AW734099
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|10844807|gb|BF068009.1|BF068009
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|197661912|gb|FD480321.1|FD480321
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|21994328|gb|BQ785856.1|BQ785856
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|207799528|gb|GD770039.1|GD770039
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATEST: gi|193555428|gb|FK514305.1|FK514305
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTAT
EST: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCEST: gi|208115093|gb|GD910408.1|GD910408
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATCCTTCTGAGATGCAGTCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCATTGGATCAGTTGGCTGATTATTTCEST: gi|5666751|gb|AI930787.1|AI930787
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
EST: ATTCTTCTGAGATGGAATCTGTCATCTGCTCTCAAGGTCCAGTTTGTCCT GTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
genomic: ATCCTTCTGAGATGGAATCTGTCATCTCCTCTCAAGGTCCAGTTTGTCCTgtaagtttgt ... tacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTC
taaatggagagtatatctttcgatttgaaaagtcgactccattcatacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCAAGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTA
attcatacattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagattttattccccttttataaaaagaaatattcttatataattaaatggagagtatatctttcgatttgaaaagtcgactccattcatacattatagGTAAGCCCTTGTATGGAACGGGCTGCGTTGGATCAGTTGGCTGATTATTTCAAGGCACGGCTGGCTGGCTACCCTACAACATTGGCTGAAGATGAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG