1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaaatccactgataaatttctttgctagacttgaaaatatttatgtcaaaaagtctggcattcattacacttttagatattaataagtgatttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATTTTATACGAGGGGAAGACTCATACAGATTTGTTTCTCCAA
species | Glycine max |
transcript | GLYMA19G05450.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAG TGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATEST: gi|10253108|gb|BE820874.1|BE820874
genomic: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAGgttagtgtat ... atttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGAT
EST: GAACTGCAGATTATTCCATACCATCAGTTGCCAG TGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATEST: gi|7028541|gb|AW458324.1|AW458324
genomic: GAACTGCAGATTATTCCATACCATCAGTTGCCAGgttagtgtat ... atttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGAT
EST: TCCATACCATCAGTTGCCAG TGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATEST: gi|9903021|gb|BE611989.1|BE611989
genomic: TCCATACCATCAGTTGCCAGgttagtgtat ... atttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGAT
EST: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAG TGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATEST: gi|31462722|gb|CD404750.1|CD404750
genomic: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAGgttagtgtat ... atttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGAT
EST: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAG TGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGATTTGAT
genomic: GTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAGgttagtgtat ... atttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGAT
gtcaaaaagtctggcattcattacacttttagatattaataagtgatttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATTTTATACGAGGGGAAGACTCATACAGATTTGTTTCTCCAA
tattaat putative branch site (score: 2)
tttttgt putative PPT
ttttagatattaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaatccactgataaatttctttgctagacttgaaaatatttatgtcaaaaagtctggcattcattacacttttagatattaataagtgatttttgtagTGAGCGGTTTGCGGAAGCTCTTAAGAAGGCAGGGGTAAGAGCTGAGTTGATTTTATACGAGGGGAAGACTCATACAGATTTGTTTCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - -tccactg
- - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca