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...tgatatgttctatcaaaataattgtcagtctttttgtccccgtaattagtgaagtctccaacatgaggaatggaatactaaagtattgaatttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTG
species | Glycine max |
transcript | GLYMA18G52160.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGGTCATGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|208306353|gb|GE104432.1|GE104432
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|208259278|gb|GE053820.1|GE053820
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|208178308|gb|GD978261.1|GD978261
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGTAAGTTTEST: gi|19053108|gb|BM731775.1|BM731775
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAG-AAGTTT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|193667121|gb|FK608029.1|FK608029
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGGAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCTTEST: gi|207845857|gb|GD819878.1|GD819878
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTACCCAAAA GTATATGTGAAATCTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCEST: gi|207793675|gb|GD766743.1|GD766743
genomic: AGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATT-CCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCC
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|193411238|gb|FK377715.1|FK377715
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTEST: gi|6070794|gb|AW100181.1|AW100181
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
EST: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAA GTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
genomic: AAGAAGGTCTTGTCTTTTCTCAGCTTTTGAATCTATCTAGATTCCCAAAAgtaagtgctg ... tttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCT
ttagtgaagtctccaacatgaggaatggaatactaaagtattgaatttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTG
tactaaa putative branch site (score: 1)
ttttt putative PPT
aatactaaagtattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatgttctatcaaaataattgtcagtctttttgtccccgtaattagtgaagtctccaacatgaggaatggaatactaaagtattgaatttttgacagGTATATGTGAAATTTAGTTCTCTTTTTCAAGTGTCAAGAGAGAAGTTTCCTTATCTGGATTTGGCTCCTCTTTTGTCCCAAGTTGTCGCTAGCTTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
tgatatg
- - - - - - - aaaataa
- - - - - - - - - - - - - - - - - tgtcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgag