1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccaaagaaattataagaaatcaaattcaaatgacttgcattatttcctttaattttgcataattgctcattagtaatattttctatgctgtatctcacaGGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTAGTTGGTTTCCACTACATTTCTTTTGCTTGTGGTTTAAACATCAACTTGG
species | Glycine max |
transcript | GLYMA18G51920.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTCTTCTATGACCTTGAAAATCAGGTTATTGGATGGACTGAGTACAAC TGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTAEST: gi|209697027|gb|BW667017.1|BW667017
genomic: TTGTCTTCTATGACCTTGAAAATCAGGTTATTGGATGGACTGAGTACAACtgtaagtatc ... gtatctcacaGGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTA
EST: CTATGACCTTGAAAATCAGGTTATTGGATGGACTGAGTACAAC TGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTA
genomic: CTATGACCTTGAAAATCAGGTTATTGGATGGACTGAGTACAACtgtaagtatc ... gtatctcacaGGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTA
tcctttaattttgcataattgctcattagtaatattttctatgctgtatctcacaGGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTAGTTGGTTTCCACTACATTTCTTTTGCTTGTGGTTTAAACATCAACTTGG
ctttaat putative branch site (score: 4)
attagtaatattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccaaagaaattataagaaatcaaattcaaatgacttgcattatttcctttaattttgcataattgctcattagtaatattttctatgctgtatctcacaGGTTCTTCAAGCATTAAAGTGAGGGATGAGCGAACGGGAACAGTCCATTTAGTTGGTTTCCACTACATTTCTTTTGCTTGTGGTTTAAACATCAACTTGG
- -aaagaaa
- - - - - - ataagaaa
- - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgct