1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atcgacatatgttctttcatatatgccccagctcttctcaagcaattctgctctaaattccggagcacatttaactttgttattattgtaattttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGG
species | Glycine max |
transcript | GLYMA18G46610.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACA AGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGEST: gi|254319562|gb|GR829074.1|GR829074
genomic: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACGtaatcctcaa ... attttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTG
EST: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACA AGGAAGAAGTAGG-TTTCACCACCAGGAAEST: gi|6483253|gb|AW202421.1|AW202421
genomic: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACGtaatcctcaa ... attttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAA
EST: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACA AGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGEST: gi|7796354|gb|AW781751.1|AW781751
genomic: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACGtaatcctcaa ... attttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTG
EST: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACA AGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTG
genomic: TGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCACGtaatcctcaa ... attttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTG
ttctgctctaaattccggagcacatttaactttgttattattgtaattttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGG
atttaac putative branch site (score: 3)
acatttaactttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgacatatgttctttcatatatgccccagctcttctcaagcaattctgctctaaattccggagcacatttaactttgttattattgtaattttacagaAGGAAGAAGTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAGATACGG
- - -catatgt
- - - - - - - - - - - -tgcccca
- - - - - - - - - - - - - - - - - - -tcaagca