1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggtaggctggaagagcatgttgctattgttctattattccttgtgttgcatcatgcttctgtattattgcacagaactgcatcatttgcacatgcaaagtttcaacgttacttatatcgaatggctcaacaaataatgcttcttggttgtttgcacaGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGACTCAACAAACGAGGCCACTCCTCAAGAGTGACTTAACTCTCCTCCCCTCT
species | Glycine max |
transcript | GLYMA18G43390.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTGGAAAGAAGAAAAAA GGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGACEST: gi|207807232|gb|GD780423.1|GD780423
genomic: GGTGGTGGAAAGAAGAAAAAAggtaggctgg ... tgtttgcacaGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGAC
EST: GGTGGTGGAAAGAAG-AAAAA GGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGAC
genomic: GGTGGTGGAAAGAAGAAAAAAggtaggctgg ... tgtttgcacaGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGAC
caacgttacttatatcgaatggctcaacaaataatgcttcttggttgtttgcacaGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGACTCAACAAACGAGGCCACTCCTCAAGAGTGACTTAACTCTCCTCCCCTCT
ttacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaggctggaagagcatgttgctattgttctattattccttgtgttgcatcatgcttctgtattattgcacagaactgcatcatttgcacatgcaaagtttcaacgttacttatatcgaatggctcaacaaataatgcttcttggttgtttgcacaGGTAAGAAAGGGGAGAAGGCAGATGAGTCAGCTGAAGCTGAGCCTATGGACTCAACAAACGAGGCCACTCCTCAAGAGTGACTTAACTCTCCTCCCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC