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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatatatttaattaacaatttcaactgactaaaaaaacaccatatttttttgacatcatattttcattcaatctctgaatgaaatattataagaattgacaaaaccacccttaattattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTGTTATTGGGGCATGCTTCTTCGTACAAAGAACACCCTTTAATAG

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15001206|gb|BI322020.1|BI322020
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|5126723|gb|AI748459.1|AI748459
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|193701153|gb|FK639996.1|FK639996
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|6094836|gb|AW119450.1|AW119450
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|208102353|gb|GD897808.1|GD897808
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCNGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|208068157|gb|GD861891.1|GD861891
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|193512048|gb|FK466796.1|FK466796
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTG
EST: gi|26048877|gb|CA785330.1|CA785330
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|6913524|gb|AW395054.1|AW395054
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTGTACAAG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|193697902|gb|FK641143.1|FK641143
EST:     GACAGGTTCCCTTGCGTTGGCAATAGTAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTG
EST: gi|193715677|gb|FK655868.1|FK655868
EST:     GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGT
genomic: GACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGT
EST: gi|193448992|gb|FK414263.1|FK414263
EST:     ACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTCTACTTTACAGG                         ATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTG
genomic: ACAGGTTCCCTTGCGTTGGCAATAATAGTCACAGGCTTC-ACTTTACAGGtatatattta ... tattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctgaatgaaatattataagaattgacaaaaccacccttaattattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTGTTATTGGGGCATGCTTCTTCGTACAAAGAACACCCTTTAATAG
       aatgaaatattataag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatatatttaattaacaatttcaactgactaaaaaaacaccatatttttttgacatcatattttcattcaatctctgaatgaaatattataagaattgacaaaaccacccttaattattcataggATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATTGTTATTGGGGCATGCTTCTTCGTACAAAGAACACCCTTTAATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC