1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgatcatcactacttgaatttcttttataaaattatgcaatgagttttcatgagcaaataatgttatattcttttattatattattcaatttaacagaactcatgcatggactaatatttatttgttatggtgctaactaaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAGACAAAGCCTTTGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTC
species | Glycine max |
transcript | GLYMA18G42940.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|207733315|gb|GD710075.1|GD710075
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|192330011|gb|FK020827.1|FK020827
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: GCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAA-CAATGTGGACAAG-A GTGGTGAAGCTGGATEST: gi|10255632|gb|BE823398.1|BE823398
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGAT
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|51335245|gb|CO979111.1|CO979111
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|192330012|gb|FK020828.1|FK020828
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: GCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|208038051|gb|GD834091.1|GD834091
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|208206230|gb|GE002063.1|GE002063
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCAEST: gi|208160707|gb|GD960487.1|GD960487
genomic: -CAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGTTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGGGATAEST: gi|7041830|gb|AW471724.1|AW471724
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|6964045|gb|AW432738.1|AW432738
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAEST: gi|10253189|gb|BE820955.1|BE820955
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
EST: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGA GTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
genomic: TCAAAGGGAGAAGTCACTTGCCTCATTTTGCGAAACAATGTGGACAAGGAgtaatgatca ... aaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATA
cagaactcatgcatggactaatatttatttgttatggtgctaactaaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAGACAAAGCCTTTGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTC
aactaac putative branch site (score: 1)
actaatatttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgatcatcactacttgaatttcttttataaaattatgcaatgagttttcatgagcaaataatgttatattcttttattatattattcaatttaacagaactcatgcatggactaatatttatttgttatggtgctaactaaccatttagGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTACCTTTAGAGGAGATAGACAAAGCCTTTGATCTTTTGATCACTGGGAAGTCACTGAGATGTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG