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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaagaaatgatgaaaaaaggttttaagtttgttaatatttctctatgagcatcacctaagagatcttaactcttaccatatgtgcttaaacttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACTGATGAAGTAACTCCGAC

Basic information

species Glycine max
transcript GLYMA18G39880.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39880.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 3'ss of exon 9
----ggtaagaaatgatgaaaaaaggttttaagtttgttaatatttctctatgagcatcacctaagagatcttaactcttaccatatgtgcttaaacttgttattc-aGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACTGATGAAGTAACTCCGAC-
    |    ||| | || |   |   | | ||||   ||    ||     |||    |      | ||||  | ||| ||| ||||| |||     ||||| |||| ||  ||||||||| ||| ||| |||| |||||||||||||||||  | |||||| | || |||||||||||||||||  ||||   |||  |  |||| || 
cgttgagttgaatttattatgtatcatatcaagtgcctt----ttgtatcatgcaactggggagatagataatgacttttaacatatctgc-----cttgtgattctagACTGGAGGAGAAGCAGAGAGCTGAAAAGAGAAACCGAGAGGCTCAAGGCCATCAATTTACTCCTAGATGGTTTGACATAACCAGTGAGATTTCTCCAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346588|gb|GR856310.1|GR856310
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|22927940|gb|BU545079.1|BU545079
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|192321193|gb|FK014283.1|FK014283
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|209715742|gb|BW674378.1|BW674378
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|19452970|gb|BM954380.1|BM954380
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|7686507|gb|AW757155.1|AW757155
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCATAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
EST: gi|13479238|gb|BG508581.1|BG508581
EST:     AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCA                         GTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC
genomic: AATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAggtaagaaat ... ttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcatcacctaagagatcttaactcttaccatatgtgcttaaacttgttattcaGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACTGATGAAGTAACTCCGAC
                                       ttaaacttgttatt  TA-rich tract