1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tacaggcatattcactgtgtcagtagttatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaaaacattacattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCTAAGTT
species | Glycine max |
transcript | GLYMA18G20800.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTG TTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCEST: gi|21601716|gb|BQ612047.1|BQ612047
genomic: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttctta ... acattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
EST: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTG TTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCEST: gi|21887761|gb|BQ740974.1|BQ740974
genomic: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttctta ... acattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
EST: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTG TTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCEST: gi|18733865|gb|BM527856.1|BM527856
genomic: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttctta ... acattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
EST: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTG TTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCEST: gi|192322691|gb|FK014382.1|FK014382
genomic: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttctta ... acattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
EST: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTG TTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
genomic: ATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttctta ... acattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGC
ggattatttgctagtttgaacaaactatatatcttacaaaacattacattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCTAAGTT
atcttac putative branch site (score: 3)
tatatatcttacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaggcatattcactgtgtcagtagttatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaaaacattacattttaggTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCTAAGTT
-acaggca
- - - - - - - ctgtgtc
- - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaca