Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttcagttcttgtactcacacatgtgaacacatatatattcattttaacgagtttcattcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG

Basic information

species Glycine max
transcript GLYMA18G08030.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08030.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
gtgaggtttcagtt--cttgtactcacacatgtgaacacatatatattcattttaacgagtttca---ttcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
|||||  ||    |  |||| | |  ||  ||| |       || |||   |  |||     |||   || ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
gtgagcattttcctggcttgcattt-catgtgttactgttctta-atttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208295094|gb|GE089579.1|GE089579
EST:     ATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
EST: gi|51334704|gb|CO978570.1|CO978570
EST:     ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactcacacatgtgaacacatatatattcattttaacgagtttcattcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
                                         tttcattcct  CT-rich tract
               aacacatatatattca  TA-rich tract