1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgtcatgcatcattcatgtatttgtttgatctgacaaaccatatgctccctttcccttttagttgtgtttaacaaaacccttacttaattgtgagcagATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCTCTGCTAAGAAAAAAAGAAGACATGGAGACAAGTCTTTACATCAG
species | Glycine max |
transcript | GLYMA18G02900.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAG ATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCTEST: gi|9900731|gb|BE609699.1|BE609699
genomic: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAGgtatgtcatg ... ttgtgagcagATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCT
EST: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAG ATAAGCTAGATACATATATEST: gi|10232947|gb|BE801835.1|BE801835
genomic: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAGgtatgtcatg ... ttgtgagcagATAAGCTAGATACATATAT
EST: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAG ATAAGCTAGATACATATATTGTATAEST: gi|22540450|gb|BU090293.1|BU090293
genomic: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAGgtatgtcatg ... ttgtgagcagATAAGCTAGATACATATATTGTATA
EST: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAG ATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCT
genomic: TGACAATTATTCCAATTCATATTCATCCAGATGTTATAATGATGTGGAAGgtatgtcatg ... ttgtgagcagATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCT
tgctccctttcccttttagttgtgtttaacaaaacccttacttaattgtgagcagATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCTCTGCTAAGAAAAAAAGAAGACATGGAGACAAGTCTTTACATCAG
tttaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcatgcatcattcatgtatttgtttgatctgacaaaccatatgctccctttcccttttagttgtgtttaacaaaacccttacttaattgtgagcagATAAGCTAGATACATATATTGTATACAATGAAAGAAGAAGGGTTACCTCCTCTGCTAAGAAAAAAAGAAGACATGGAGACAAGTCTTTACATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA