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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA

Basic information

species Glycine max
transcript GLYMA18G02210.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaa-aaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                | |||       ||| ||   ||| || | ||||  ||      |  | |   |     ||||    || |||   |||    |      || |  || ||||||||| || || |||||||||||||||||| || | |||||| | || |||||||| |||||  ||||||| ||||||||| ||||||| ||||| ||||
------------------------------------------------------------------------------------------------acttgcaggaacaaaacaaatttctgttagtttctgttgcaatgcaatgt-gctgaaaaatcatttgaaattgatgaggagtttggttg-atgaaact-gcagGTTCCCCCAGGCACACCAGTGGTGAATGCACTGGCCAAGCAGAGGGCCATGCTGGAGAACATCCTGAGGGCCTGTGTTGGACTGGCCCCTGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttg---cagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                                 | ||  || | |    || || | | |  | || || |    | |||   | ||    | || ||  | ||     ||| ||   |||||||| || || |||||||||||||| ||  || |||||||| | |||||||| || ||||| |||||||| || |||||  ||||||| ||||| ||||
---------------------------------------------------------------------------------------------------------------gtactgcccattaa----ccgttatgttctttcatgatat----accaactgatttacttatgtcacgaaaaattcgtctcctggaacagGTTCCTCCTGGCACACCAGTGGTGAACGCCCTGGCAAAGCAGAGGGCAATGCTTGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCCGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 3'ss of exon 8
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttg---cagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                 | ||   |  |  |||  ||| | |   |||  || || |   | ||  |||  | | | |||   | ||    | || ||  | ||     ||| ||   |||||||| || || |||||||||||||| ||  || |||||||| | |||||||| || ||||| |||||||| || |||||  ||||||| ||||| ||||
----------------------------------------------------------------------------------------------gtgagtgcatacatgcatc--tgtactgcccattaaccgttatgttcttt--catgatat-accaactgatttacttatgtcacgaaaaattcgtctcctggaacagGTTCCTCCTGGCACACCAGTGGTGAACGCCCTGGCAAAGCAGAGGGCAATGCTTGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCCGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtga-atttcccttttttccccttatcatttttttatcaaaaaagttggcaaggtta-ctcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                         || |     ||   | |    | ||||    |  |  |    ||| ||  |  |||   ||  |  ||  ||  || |||| |      |  ||||||||||| || ||||| |||||||| ||  |  |||||||| | || |||||||| ||||| ||||||||||| |||||  ||||||||||||| ||||
---------------------------------------------------------------------------------------------------------gtaagccttttcgcctgcattaattccggcatcgctgcaccgcatcttgct-ccaatccagccgctaatcttctcttacaaaacctgaatgacagGTTCCACCCGGCACACCGGTGGTGAACGCTCTTGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCTTGCGTTGGCCTGGCCCCAGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 4
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactc--acaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                           |||  | ||   |    | |    ||    || |   | |   | ||  || ||     | || |   | |||  |||| |         |||||||| || || ||||| |||||||| ||  || |||||||| | || |||||||| ||||| |||||||| || ||||| |||||||||||||| ||||
----------------------------------------------------------------------------------------------------------gtaagccttttcgcctgcattaattctggcatcgctgcaccgcatcttgctccaatccaatcgctaatcttctcttacaaaacctgaacgacagGTTCCGCCCGGCACACCGGTGGTGAACGCTCTGGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGCTTGGCCCCAGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 7
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatc-aaaaaagttggcaaggtta-ctcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                           |||  | ||   |    | |    ||    || |   | |   | ||  || ||   ||  |  ||  ||  || |||| |         |||||||  || || ||||  |||||||||||  || |||||||| | || |||||||| ||||| |||||||| ||||||||  |||||| |||||| ||||
----------------------------------------------------------------------------------------------------------gtaagccttttcgcctgcattaattctggcatcgctgcaccgcatcttgctctaatctagccgctaatcttctcttacaaaacctgaacgacagGTTCTGCCCGGCACACTGGTGGTGAATGCTCTGGCAAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGTGTTGGCCTGGCCCTAGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                         || |     || | | |        | |   | | |    |  |  ||  ||| |   |  ||      |  |||  ||| | |      |||||||| || || ||||| |||||||| ||  || | |||||| | || |||||||| ||||| |||||||| || |||||  ||||||||||||| ||||
---------------------------------------------------------------------------------------------------------gtaagccttttctcctgcatcccggcatcactgcactgcgttttgcttcaatccagcca-ctgatcgtctctctcgaaacctgaaca--acagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCAGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                                    || |||  ||| |   |   |      | || |||||    | || |   ||  | |             ||  | |||  ||    ||    |||||||||| || || || ||||| || ||||| ||||| || |||||||||||||| || ||| || | || |||||||||||| | || || ||||| ||||
----------------------------------------------------------------------------------------------------gt-aagcaaaaccgaagcaaaacattgtgccgtttttcaatcctagcgacttccttt-------------aacatcactttca-ttcaatgaatgcagGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCGAAACAGCGTGCAATGCTTGAGAACGTACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACA

upper sequence: GLYMA18G02210.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 9
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                                                                      ||  |  |   |   |   |||     | | | |   |||| |    ||  |     || |||| |  | |   ||   || |   |  || | | ||||           ||||||||| || || ||||||||||||||| || | |||||||| |||||||| || |||||| | |||||||||||||||||||| || ||||| ||||
-----------------------------------------------------------------------------------gacatcaaagttttaccttcttgtttgg--aatatgcgaggaatgtagagttagttga--tagcattatgatgttgtaacgttttgttggtgtattaaaaaca-----------gGTTCCACCAGGCACTCCAGTGGTGAATGCACTGGCGAAGCAGCGGGCAATGCTCGAGAACATACTAAGGGCTTGTGTTGGATTGGCTCCCGAGAACAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207774146|gb|GD743268.1|GD743268
EST:     CATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|17021583|gb|BM092617.1|BM092617
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|9900642|gb|BE609610.1|BE609610
EST:     TTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGGCTCCT-TG
genomic: TTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGG-CTCCTCTG
EST: gi|193529719|gb|FK483986.1|FK483986
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|7327134|gb|AW620996.1|AW620996
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|208231045|gb|GE033444.1|GE033444
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGC
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGC
EST: gi|6200949|gb|AW153049.1|AW153049
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|193430848|gb|FK393682.1|FK393682
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTG
EST: gi|5753617|gb|AI960904.1|AI960904
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|6070479|gb|AW099866.1|AW099866
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|6725970|gb|AW310369.1|AW310369
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|207779965|gb|GD753986.1|GD753986
EST:     CATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|208315496|gb|GE116190.1|GE116190
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|208298017|gb|GE092364.1|GE092364
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGCGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|22931962|gb|BU549101.1|BU549101
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|4299061|gb|AI442850.1|AI442850
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|209697827|gb|BW670083.1|BW670083
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|208190804|gb|GD991424.1|GD991424
EST:     TACCATTCTCAGTCTTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: TACCATTCTCAG-C-TATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|213592630|gb|DB979421.1|DB979421
EST:     CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: CATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
EST: gi|193686704|gb|FK626097.1|FK626097
EST:     TTCCACCCAGTTGGCTACCCATTCTCAGCTATCTGACCAAGGCTCCTCTG                         GTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG
genomic: TTCCACCCAGTT-GCTA-CCATTCTCAGCTATCTGACCAAGGCTCCTCTGgtgagtttaa ... actcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA
                                              ctcttgc  CT-rich tract
     tttttttatcaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttaatctaatcttattcaatgttgagtgcatatccttatttttatataggaattaagttgaaagaaatatgagttttagtattgagatacaattgtgaagttaaatcattgttcagtgaatttcccttttttccccttatcatttttttatcaaaaaagttggcaaggttactcacaacataactcttgcagGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA