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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgttatttactttctatttctttgttgtaagagtcattgttaaactgatttttgttggttgattgtttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT

Basic information

species Glycine max
transcript GLYMA18G02110.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 3'ss of exon 8
gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgttattt--actttctatttctttgttgtaagagtcattgttaaactgatttttgttggttgattgtttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                                           ||  | ||  |    |||   || ||  |  || |  | |||| |  | | ||| |  |  |          ||     | ||| | | |    |  || || | | ||       |||||| ||||| ||||||||||||||||||||||||||||| || || || |||||| | || || || || || |||||||||||  |||||||| ||||
----------------------------------------------------------tgtttgtat--atgtgtgacactacttgtatgttttggtgctttttcatgaaagttacagcca----------tggaaactaattttataatgcat-gtttgctcattttc------agGTCCTAATGGTAGTGGAAAAAGCTCCCTTTTCCGGGTTCTTGGGGGACTGTGGCCACTTATGTCAGGCCACATTGTGAAACCTGGTGTTGGCTCTAATCT

upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G375807_T01 (Zea mays), 3'ss of exon 7
gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgt-tatttactttctatttctttgttgtaagagtcattgttaaactgatttttgttggttgattgtttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                                       ||  ||        || | |||| | ||| ||  |||| || |||| | |    |||    |  |     |||||               |||  ||   ||  |   | |||      |||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| || ||||||| ||||| || ||||||||  |||| ||  ||||
-----------------------------------------------------ttttatgtgtatgcctaatgctgatttatatctatgttcttttgctttatgg---aagttgcagccatgggaatttta--------------tgatgtgcc-ttaacttctatttc-----agGTCCCAATGGTAGTGGAAAAAGCTCCCTTTTCCGTGTTCTTGGTGGTCTGTGGCCAATGGTATCTGGTCATATTGTCAAACCTGGTGTTGGTTCCAATCT

upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 7
gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgttatttactttctatttctttgttgtaagagtcattgttaaactgatttttgttggttgattgt-ttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                                                  |   ||  |     ||| ||     ||  ||||||    || |   ||  || ||   || ||   ||    | |||  | |||  ||   ||   | |  |   |  |||||| ||||| || ||||||||||||||||| ||||| || || ||||| |||||| || ||||||| || || || ||||||||  |||| || |||||
------------------------------------------------------------------tctcaaactcccaatatgta-----tacatctttgc-acaaaatgtatgtttgaa--aatctta--tgtcccactgtgctaacaattttacggatttacactccttccagGTCCCAATGGTAGCGGAAAAAGCTCCCTTTTTCGGGTCCTTGGGGGTCTATGGCCACTGGTATCTGGCCACATTGTTAAACCTGGTGTTGGTTCAGATCT

upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G39850.1 (Arabidopsis thaliana), 3'ss of exon 8
gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgttatttactttctatttctttgttgtaagagtcattgttaaact--gatttttgttggttgattgtttgacatgttattggcgcttc-----tttg-gctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                                                                   | | ||| | ||   ||| |  |  | | |    || | |   | ||||| |   || ||   ||| || | |||      ||     | ||    | |||||| ||||| ||||| || || ||||||||||| ||  |||| ||||| |||||  || | ||||||||||| ||||| || ||| |||| ||||||||
-----------------------------------------------------------------------------------tcattttatgttatattgattaagcaataacatctagattcgaaattttgatttctgcttacctgatatatcattatttgctcaacaatatgtatcgtagGTCCTAATGGAAGTGGCAAGAGTTCCCTTTTCCGAGTATTAGGAGGTCTATGGCCCCTGGTGTCTGGACATATTGTGAAGCCAGGAGTTGGTTCTGATCT

upper sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S150_142V6.1 (Physcomitrella patens), 3'ss of exon 9
gtagctatctgaactctctttttagtggccgatttttatttatttttcagggggcttgagtcagcattgaaagttgatgttatttactttctatttctttgttgtaagagtcattgttaaactgatttttgttggttgattgtttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                                                      | || |  ||||  |   | |  |  |  || | | |     |||   ||  ||||||||   | ||   | |      |     || |    || ||  |  |||||||||||| ||||||||||||   || ||||| ||||||||||| || ||||| ||  |    || |  || |  ||||| || || || ||||   |
-------------------------------------------------------------------cttaggtagtcgttaagtgtatccgctcccgatggtatca-----atttccaa--tgatttttcgcgtttagatttcatgtttacagctgtcatggctgtg-ttacagGTCCAAATGGAAGTGGAAAAAGCAGTCTGTTCCGAGTTCTAGGTGGGCTGTGGCCCTTAGTGGAGGGGCGCATTGCAAAACCAGGCATGGGTTCTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatttttgttggttgattgtttgacatgttattggcgcttctttggctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCT
                                      cgcttcttt  CT-rich tract
     tttttgtt  TA-rich tract