Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttttgcttcctttcatttggaaccttttatcacccccttttaatttcctccgtatctatccgttgcaatctttaatttgcaattatttactgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGCATTGCTCAGTTTGGGTGTCTGACAGTCAGTCTTGTCGTCTTCTATGTT

Basic information

species Glycine max
transcript GLYMA18G00920.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00920.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 3'ss of exon 9
agttttgcttcctttcatttggaaccttttatcacccccttttaatttcctccgtatctatccgttgcaatctttaatttgcaattatttactgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGCATTGCTCAGTTTGGGTGTCTGACAGTCAGTCTTGTCGTCTTCTATGTT-----------
   || |  |  |||  |||      |  | || |    |   | |||     |  |||| || |||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| | ||||||||||| |||||||| |||| ||| | ||||            
---ttcgaatggttttgttt------tcctgtctcgttttccaattttatattgcttcta-cctttgcatccattaatttgcaattatctactgttccagtgagtactagGACATGTTTGAGGGTTGAGAAGGTCCAGGGTTGTCGTCCAGCATTGCTCAATATGGGTGTCTGAAAGTCAGTCGTGTCATCT-CCATGTCGCAGCGCTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312177|gb|FK005662.1|FK005662
EST:     CAGCCGAGTCTGGAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|254326113|gb|GR840705.1|GR840705
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|192324353|gb|FK015704.1|FK015704
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|31458741|gb|CD400769.1|CD400769
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|13563234|gb|BG551454.1|BG551454
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|58022050|gb|CX708791.1|CX708791
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|14008855|gb|BG725459.1|BG725459
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|4289526|gb|AI441488.1|AI441488
EST:     CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCANAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|192312176|gb|FK005661.1|FK005661
EST:     CAGCCGAGTCTGGAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: CAGCCGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
EST: gi|6073149|gb|AW102536.1|AW102536
EST:     ATCTCCTTCACCAGCTGCAGATCAAAATGATCAG                         TGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG
genomic: ATCTCCTTCACCAGCTGCAGATCAAAATGATCAGgtttgttgtg ... actgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctccgtatctatccgttgcaatctttaatttgcaattatttactgttccagTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGCATTGCTCAGTTTGGGTGTCTGACAGTCAGTCTTGTCGTCTTCTATGTT
                          ctttaat  putative branch site (score: 4)
                                              ctgttcc  putative PPT
                       aatctttaatttgcaa  TA-rich tract