1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgcccatgtcttttccagcattggttttaatattgtttcccgttgcatattatgcccatgtcttttgcagcattggttttaatattgtttccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
species | Glycine max |
transcript | GLYMA17G37540.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAEST: gi|192301029|gb|FG987984.1|FG987984
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAEST: gi|193549001|gb|FK510070.1|FK510070
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAEST: gi|120492530|gb|EH220697.1|EH220697
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAEST: gi|151403004|gb|EV272817.1|EV272817
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAEST: gi|120492830|gb|EH220997.1|EH220997
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
EST: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA GGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
genomic: GGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAggtttgtgca ... ccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
catattatgcccatgtcttttgcagcattggttttaatattgtttccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
ttttaat putative branch site (score: 3)
tttccatttt putative PPT
ttttaatattgtttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccatgtcttttccagcattggttttaatattgtttcccgttgcatattatgcccatgtcttttgcagcattggttttaatattgtttccattttgcaGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - catgtct
- - - - - - - - - - - - - - - - - gtttccc
- - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - tatgccc