1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggtgagttctttctctgaggaagctatttttgtgtgtatcaattatgtacaaagggattactcctccttgtcactcataggcacaacaatttgacttctttctttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGACTAAAAGCTATTATAAAATTCTGAGCCA
species | Glycine max |
transcript | GLYMA17G37220.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAA GGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTAEST: gi|24205537|gb|BU964790.1|BU964790
genomic: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAggtgagttct ... ttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTA
EST: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAA GGCTGTTAGAAAACTGGATGATGCAAAGAAACTCGAATCCAGTGCTCACTAEST: gi|58014288|gb|CX701030.1|CX701030
genomic: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAggtgagttct ... ttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTA
EST: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAA GGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTAEST: gi|20812590|gb|BQ297068.1|BQ297068
genomic: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAggtgagttct ... ttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTA
EST: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAA GGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTA
genomic: GCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAggtgagttct ... ttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTA
tactcctccttgtcactcataggcacaacaatttgacttctttctttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGACTAAAAGCTATTATAAAATTCTGAGCCA
atttgac putative branch site (score: 4)
cttctttctttggttc CT-rich tract
aacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgagttctttctctgaggaagctatttttgtgtgtatcaattatgtacaaagggattactcctccttgtcactcataggcacaacaatttgacttctttctttggttcccaGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGACTAAAAGCTATTATAAAATTCTGAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG