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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggctttacctttcagcctttattcaatcacacttgagcattgtttaattatttgcatctctgactagagtttaactttacccatggattgtgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTAGTGGTAAATAG

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412705|gb|EV282517.1|EV282517
EST:     TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG                         GG-CTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG                         GGGCTTCTTTTCTCGACATTTTGAGCTTG
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTT-CTCGACATTTTGAGCTTG
EST: gi|6719570|gb|AW307217.1|AW307217
EST:     TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG                         GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: gi|15203897|gb|BI426665.1|BI426665
EST:     TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG                         GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
EST: gi|254342910|gb|GR859072.1|GR859072
EST:     TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAG                         GGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT
genomic: TTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAAAATTACAAAGgtatgtatct ... tgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatttgcatctctgactagagtttaactttacccatggattgtgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTAGTGGTAAATAG
                       gtttaac  putative branch site (score: 3)
 tttaacttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggctttacctttcagcctttattcaatcacacttgagcattgtttaattatttgcatctctgactagagtttaactttacccatggattgtgagctgcagGGGCTTCTTTCTCGACATTTTGAGCTTGATCGGCACCTTCTCGAATATGTTAGTGGTAAATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT