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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaaaaaaaccttttacccttagttaaagtgttcataggacccctgttgatatttatctttttttataataaatatttatatttaatttgtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAATGACTGATCAACAACAGTGGCAAACCGGGCCTTCACATTATTTAGCAA

Basic information

species Glycine max
transcript GLYMA17G18640.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208123112|gb|GD925036.1|GD925036
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|208215470|gb|GE012471.1|GE012471
EST:     CACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: CACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|16346744|gb|BI972339.1|BI972339
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGCGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|213614090|gb|DB976351.1|DB976351
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|208167238|gb|GD958716.1|GD958716
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|31305874|gb|CD391077.1|CD391077
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|207716329|gb|GD697593.1|GD697593
EST:     CAAAATTTTGCACACATTCACCCACCAAATTTTCATT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC
genomic: CAAAATTTTGCACACATTCACCCACCAAATTTTCA-Tgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC
EST: gi|208316063|gb|GE117359.1|GE117359
EST:     AGTCCCAAACGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgatatttatctttttttataataaatatttatatttaatttgtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAATGACTGATCAACAACAGTGGCAAACCGGGCCTTCACATTATTTAGCAA
                                    atttaat  putative branch site (score: 4)
     atatttatcttttttt  TA-rich tract