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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgatatatacatcttcagttctagattttagttgtactcatggtggttggtaactaaagatgaatactattactgttatctcgttttagGTTCCAGAAAGTGAGCTGGCAAAGCTTCTTCTTCACAAGATACCAAACACTGTAAACATTGAAACGTTGCATAAAATTCTTCCTGGCAATTTCAAAATTG

Basic information

species Glycine max
transcript GLYMA17G18400.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994503|gb|BQ786031.1|BQ786031
EST:     TCAAACATGGAGTTGATAAGGAATTTCCAATTGCATTAGTTCAAGAGCAT                         GTTCCAGAAAGTGAGCTGGCAAAGCTTCTTCTTCACAAGATACCAAACACT
genomic: TCAAACATGGAGTTGATAAGGAATTTCCAATTGCATTAGTTCAAGAGCATgtaagctgat ... ctcgttttagGTTCCAGAAAGTGAGCTGGCAAAGCTTCTTCTTCACAAGATACCAAACACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcatggtggttggtaactaaagatgaatactattactgttatctcgttttagGTTCCAGAAAGTGAGCTGGCAAAGCTTCTTCTTCACAAGATACCAAACACTGTAAACATTGAAACGTTGCATAAAATTCTTCCTGGCAATTTCAAAATTG
                 aactaaa  putative branch site (score: 2)
 tctcgtttt  putative PPT
 aatactatta  TA-rich tract