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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtataataggctgtctatgcccttcctagcacccaaatatttgttaatatgaacttgttttgcaaaatgtttttaacagaatatttattgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAGCACATTGAGTTGTTGGTGCTTGTTGAGATATGGTGTTCGTTCTTGACA

Basic information

species Glycine max
transcript GLYMA17G17520.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688714|gb|BF596390.1|BF596390
EST:     AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATG                         GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: gi|10231684|gb|BE800572.1|BE800572
EST:     AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATG                         GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: gi|14126494|gb|BG790932.1|BG790932
EST:     AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAACCATG                         GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: gi|7028220|gb|AW458003.1|AW458003
EST:     GCAAAAGAAGCCATG                         GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
genomic: GCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatatgaacttgttttgcaaaatgtttttaacagaatatttattgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAGCACATTGAGTTGTTGGTGCTTGTTGAGATATGGTGTTCGTTCTTGACA
                    aaaatgtttttaacag  TA-rich tract