1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acatatttgccaagctgtttatttttactgattaattaaatcttcccacattgcttagattattatgacttactgtgctggttttttttcaaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTCCAGTTCAGAACCGAAGACTGCTCTGGAGTCACAGTTGAAGAATTATAA
species | Glycine max |
transcript | GLYMA17G15990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAG CTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTEST: gi|58022411|gb|CX709152.1|CX709152
genomic: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAGgtacgagaag ... aaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCT
EST: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAG CTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTEST: gi|192306339|gb|FG996897.1|FG996897
genomic: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAGgtacgagaag ... aaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCT
EST: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAG CTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTEST: gi|151412161|gb|EV281973.1|EV281973
genomic: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAGgtacgagaag ... aaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCT
EST: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAG CTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCT
genomic: CACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAGgtacgagaag ... aaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCT
ccacattgcttagattattatgacttactgtgctggttttttttcaaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTCCAGTTCAGAACCGAAGACTGCTCTGGAGTCACAGTTGAAGAATTATAA
gacttac putative branch site (score: 2)
ttttttttca putative PPT
ttttttttcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatttgccaagctgtttatttttactgattaattaaatcttcccacattgcttagattattatgacttactgtgctggttttttttcaaaattgcagCTTGTGCACCCAGAAAACAAGGACATTCGCGACATTCCAGGACTAGCTCCTCCAGTTCAGAACCGAAGACTGCTCTGGAGTCACAGTTGAAGAATTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -tttgcca
- - - - - - -gctgttt
- - - - - - - - - - - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgtgc