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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaaatttcttttcgacactgaagcctgaggttttcattaggatggtctgtaaacagttcttatcattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGCGGCCCTG

Basic information

species Glycine max
transcript GLYMA17G09270.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023113|gb|BM094147.1|BM094147
EST:     GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG                         GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: gi|192307673|gb|FK001617.1|FK001617
EST:     GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG                         GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: gi|192314017|gb|FK011109.1|FK011109
EST:     GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG                         GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: gi|21887377|gb|BQ740590.1|BQ740590
EST:     GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG                         GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagcctgaggttttcattaggatggtctgtaaacagttcttatcattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGCGGCCCTG
                                      ttcttatc  CT-rich tract
                                         ttatcatttt  TA-rich tract