1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aataatttatttttgaaatttttttcttgtatgagattatgcagatacttgacactatatctgtgtgataaaaactcaataccattttgctataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCAGCATCAGAACTCGCTGGTATCCATGGTACTCTGGT
species | Glycine max |
transcript | GLYMA17G08090.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAG TGGGGACACAGATTCTGTGEST: gi|298169437|gb|HO020797.1|HO020797
genomic: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGgtatggtttt ... tataatgtagTGGGGACACAGATTCTGTG
EST: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAG TGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAAEST: gi|20813727|gb|BQ298205.1|BQ298205
genomic: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGgtatggtttt ... tataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAA
EST: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAG TGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAAEST: gi|13562841|gb|BG551061.1|BG551061
genomic: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGgtatggtttt ... tataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAA
EST: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAG TGGGGACACAGEST: gi|13482353|gb|BG511696.1|BG511696
genomic: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGgtatggtttt ... tataatgtagTGGGGACACAG
EST: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAG TGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAA
genomic: CCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGgtatggtttt ... tataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAA
tacttgacactatatctgtgtgataaaaactcaataccattttgctataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCAGCATCAGAACTCGCTGGTATCCATGGTACTCTGGT
acttgac putative branch site (score: 4)
ttttgct putative PPT
ataaaaactcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataatttatttttgaaatttttttcttgtatgagattatgcagatacttgacactatatctgtgtgataaaaactcaataccattttgctataatgtagTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCAGCATCAGAACTCGCTGGTATCCATGGTACTCTGGT
- - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - -tgacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa