Sequence
atgc intronic sequence ATGC exonic sequence...aaggagtgaaatgacaagtaaaaaggcttaaatgtggcatatttgaaacatttgttagatccccaactctatagtgatttcattctggttgttgtcccagATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
Basic information
species | Glycine max |
transcript | GLYMA17G07320.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07320.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 4
aaggagtgaaatgacaagtaaaaaggcttaaatgtggcatatttgaaacatttgttagatccccaactctatagtgatttcatt-ctggtt----gttgtcccagATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
|| |||| || | | || || |||| | | ||| | | | || |||| | ||| || ||| || | ||| ||||| | ||| || ||||| || || || | ||||| ||||||||||||||||||||||| || || ||||| || ||||||||||| || |||||||||
-----gtaaaatttcattcctttattatcaattga-----atttaacatattgatca-acgtttaagtctagtataattcttttactgcttttctgctgttgcagATAGAAGATTTTTGGAAAGAAGCCCTGTTATTGAGCTCATTGCATCATCCAAATGTTGTGTCGTTCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTC
upper sequence: GLYMA17G07320.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 3
aaggagtgaaatgacaagtaaaaaggcttaaatgtggcatatttgaaa---catttgttagatccccaactctatagtgatttcattctggttgttgtcccagATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
|| | | | ||| | | | | ||| | ||| || || ||| | | | | | || | || | ||| || ||||| || || |||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||| | ||| ||||
-gagaataattttgcaacttcagtgttctgc-tgtagttcattaccaattacacttgcttcagtttgcattg-actgtttgtctatccatcttgccgttacagATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacatttgttagatccccaactctatagtgatttcattctggttgttgtcccagATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
ttgtccc CT-rich tract
atttcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaggagtgaaatgacaagtaaaaaggcttaaatgtggcatatttgaaacatttgttagatccccaactctatagtgatttcattctggttgttgtcccagATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
- - - - - -tgacaag
- - - - - - - - - - - - - - - -atgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaactc