1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctcaagggaactactgcatacacatgaatgaatttgtttgcttgcaagctttgtgatgatcttgagttgcaaatgtatgctaatacaatgccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTCCAAACTCCAGCTCCCGGAATCAGTTCGATAGCTCATTATATGTGTCGAA
species | Glycine max |
transcript | GLYMA17G07290.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAACAGCAAATCAATTCAGGGATACCTGTTGGAG GTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTCEST: gi|151400273|gb|EV270087.1|EV270087
genomic: TGAACAGCAAATCAATTCAGGGATACCTGTTGGAGgtaagcatta ... gccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTC
EST: AGTGTCTGTTCCTTCTGAACAGCAAATCAATTCAGGGATACCTGTTGGAG GTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTCEST: gi|18721124|gb|BM523314.1|BM523314
genomic: AGTGTCTGTTCCTTCTGAACAGCAAATCAATTCAGGGATACCTGTTGGAGgtaagcatta ... gccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTC
EST: AGTGTCTGTTCCTTCTGAACAGCAAATCAATTCAGGGATACCTGTTGGAG GTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTC
genomic: AGTGTCTGTTCCTTCTGAACAGCAAATCAATTCAGGGATACCTGTTGGAGgtaagcatta ... gccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTC
caagctttgtgatgatcttgagttgcaaatgtatgctaatacaatgccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTCCAAACTCCAGCTCCCGGAATCAGTTCGATAGCTCATTATATGTGTCGAA
tgctaat putative branch site (score: 2)
tgccttttc putative PPT
taatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcaagggaactactgcatacacatgaatgaatttgtttgcttgcaagctttgtgatgatcttgagttgcaaatgtatgctaatacaatgccttttcagGTTACAACGATAATAATATAGTAACACGATATCCAACCCAGTCATTGATTCCAAACTCCAGCTCCCGGAATCAGTTCGATAGCTCATTATATGTGTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - actactg
- - - - - - - - -catacac
- - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct