1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaatgctggctacttccattttaaagagaaaatataatactgttggtttacatgtcaggcttttctaaacaacacttgtaaacctgtttccttttgcagTTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTTCTTGTTGCTGTTATCTTGGATAATACTGTGCCTGGCAGCAAGCAGGAAC
species | Glycine max |
transcript | GLYMA17G05280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACCCTACATTGTAGCTTCTCATGGGCCTTTCCGCAGCAAATATGGAGGG TTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTT
genomic: AACCCTACATTGTAGCTTCTCATGGGCCTTTCCGCAGCAAATATGGAGGGgtatgccttt ... ccttttgcagTTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTT
ggtttacatgtcaggcttttctaaacaacacttgtaaacctgtttccttttgcagTTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTTCTTGTTGCTGTTATCTTGGATAATACTGTGCCTGGCAGCAAGCAGGAAC
ttctaaa putative branch site (score: 2)
cctgtttccttttgc putative PPT
ttttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgctggctacttccattttaaagagaaaatataatactgttggtttacatgtcaggcttttctaaacaacacttgtaaacctgtttccttttgcagTTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTTCTTGTTGCTGTTATCTTGGATAATACTGTGCCTGGCAGCAAGCAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-gaatgct
- - - - -gctactt
- - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - -actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttt