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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttctaatgctttatattttgcataacatataattcccttctatttcttatttagttgtcttcattaaacagGCTGGCAAAAAACTTCTACTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT

Basic information

species Glycine max
transcript GLYMA17G04580.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtattacttctaatgctttatattttgcataacatataattcccttctatttcttatttagttgtcttcattaaacagGCTGGCAAAAAACTTCTACTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
||| |  |||      |  | | | |   |||| ||| ||    |||  ||  | || | ||  | ||| || |  ||||||| || || ||  | || || || ||||| |||||||  ||||||||||||||||||  |||||| ||||| | |||||||||||| || ||||  |
gtaatggttcagtctttacacaatatatctaac-tatgatggt-ttcagttgttaatattgtcatgttcgttca-tagGCTGGTAAGAAGCTCTTGCTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAATTCCTTCCCAATGACATGGACT

upper sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
gtattacttctaatgctttatattttgcataacatataattcccttcta----tttcttatttagttg----tcttcattaaacagGCTGGCAAAAAACTTCTACTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
||||  ||| |||  |||  || | |   | |||  | |     || ||     | |||||| | |||    |  |  |  | |||||||||||||| ||| | || ||||||||||||||||||| ||| |||||||||||||||| |||||| ||||| | ||||||||| || |||||||| |
gtat-gcttataactcttc-tagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcataacatataattcccttctatttcttatttagttgtcttcattaaacagGCTGGCAAAAAACTTCTACTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
   gcataac  putative branch site (score: 3)
                                      ttgtcttc  putative PPT
                     ttctatttcttattta  TA-rich tract