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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatttcctctgattggttgttctttataatgcacactttttatgaatttgtggtattcactcatcttatgctgtttcaagGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGCCCAGACCCAAGAATTGTTACTGTCTGTTTAGAAGGCCTAGAGAATATT

Basic information

species Glycine max
transcript GLYMA17G03430.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
gtatgttatttcctctgattggttgttctttataatgc---------acactttttatgaatttgtggtattc---actcatc--ttatgctgtt--tcaagGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGCCCAGACCCAAGAATTGTTACTGTCTGTTTAGAAGGCCTAGAGAATATT
||||||||| |    |  |  |  |||| || | |||          || || |||    |    | |||||    | | | |   | || || |  |  |||||| |||||||||| || |||||||||||  | ||||| || ||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || 
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19345923|gb|BM890803.1|BM890803
EST:     GCTTGGGCAATCTCAAATGCTACATCTGGTGGAATTCATGAGCAGATCAA                         GTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTG
genomic: GCTTGGGCAATCTCAAATGCTACATCTGGTGGAATTCATGAGCAGATCAAgtatgttatt ... ctgtttcaagGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgcacactttttatgaatttgtggtattcactcatcttatgctgtttcaagGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGCCCAGACCCAAGAATTGTTACTGTCTGTTTAGAAGGCCTAGAGAATATT
                                             ctgtttc  CT-rich tract
         actttttatgaattt  TA-rich tract