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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtgttctcttttggtttgtgttacaaattccgtatgcattgtgtctgggtaaattatgaataatttaaattttggttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGGCATCCTGATGGCCGCATTTTTGCTACTGGGAACCAAGACAAAACATGCC

Basic information

species Glycine max
transcript GLYMA17G00740.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00740.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s1206g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtggtgttctcttttggtttgtgttacaaattcc-gtatgcattgtgtctgggtaaattatgaataatttaaattttggttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGGCATCCTGATGGCCGCATTTTTGCTACTGGGAACCAAGACAAAACATGCC
   ||   || |||       |   ||   | || ||| |           |  |   |   | | |||| || |||  |    |||||||  ||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||   || ||||| ||||||||||| ||||| || ||||
---gtac-ctgtttcctaacataaaacttctcccagtagggggaaaaataagaaacggttccactcatttgaagttttttatcatgtagACCATCAGGCCTTTGTGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCAATATATTTGCCACTGGGAACCAGGACAAGACTTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018610|gb|CX705352.1|CX705352
EST:     TTGTTGGAGACAACCCAGAAGGGATACTAGTGGATTCTCAAACTGGAAAG                         ACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG
genomic: TTGTTGGAGACAACCCAGAAGGGATACTAGTGGATTCTCAAACTGGAAAGgtggtgttct ... ttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG
EST: gi|209704180|gb|BW664798.1|BW664798
EST:     TGTTGGAGACAACCCANGAAGGGATACTAGTGGATTCTCAAACTGGAAAG                         ACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG
genomic: TGTTGGAGACAACCCA-GAAGGGATACTAGTGGATTCTCAAACTGGAAAGgtggtgttct ... ttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG
EST: gi|22933239|gb|BU550378.1|BU550378
EST:     CTCAAACTGGAAAG                         ACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG
genomic: CTCAAACTGGAAAGgtggtgttct ... ttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtatgcattgtgtctgggtaaattatgaataatttaaattttggttctttgtagACTGTCAAGCCTTTATGTGGACACTTGGATTACTCATTTGCGTCTGCATGGCATCCTGATGGCCGCATTTTTGCTACTGGGAACCAAGACAAAACATGCC
                                             ttctttgt  CT-rich tract
                   taaattatgaataatt  TA-rich tract