1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggtctgagatttgttgagcattttttaagtacatatatatatgtgtgtgtgttgtaagccattgcagatgccaagttgatataatatatttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATCCAGTTGATAATAATAGATGATATTCTCAGCTTTCGGCAGCTGGGTTTT
species | Glycine max |
transcript | GLYMA17G00580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAG GGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATEST: gi|14126070|gb|BG790508.1|BG790508
genomic: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGgtaatgaagc ... ttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
EST: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAG GGTTGGACGATGTCGGAAT-ACATCTAAATCCTGGTCGAGCACGGCTTCATEST: gi|6848202|gb|AW350492.1|AW350492
genomic: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGgtaatgaagc ... ttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
EST: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAG GGTTNGACGATGTCAGAATCACANNNAAATCCTGGTCGAGCACGGCTTCATEST: gi|19346034|gb|BM890914.1|BM890914
genomic: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGgtaatgaagc ... ttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
EST: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAG GGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATEST: gi|17400728|gb|BM177510.1|BM177510
genomic: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGgtaatgaagc ... ttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
EST: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAG GGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
genomic: AGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGgtaatgaagc ... ttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCAT
gtgtgtgttgtaagccattgcagatgccaagttgatataatatatttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATCCAGTTGATAATAATAGATGATATTCTCAGCTTTCGGCAGCTGGGTTTT
agttgat putative branch site (score: 5)
aagttgatataatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtctgagatttgttgagcattttttaagtacatatatatatgtgtgtgtgttgtaagccattgcagatgccaagttgatataatatatttgtgtgcagGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATCCAGTTGATAATAATAGATGATATTCTCAGCTTTCGGCAGCTGGGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - tgttgag
- - - - - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcca