1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctctaatttaagccttaaactgtctccctttgttttgttttcaatgcaatcaatttcaacttacaatctctaccttgttgtccacttaatttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCA
species | Glycine max |
transcript | GLYMA16G34350.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA GCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGEST: gi|19347149|gb|BM892029.1|BM892029
genomic: CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatg ... ttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
EST: CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGA GCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
genomic: CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatg ... ttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
gcaatcaatttcaacttacaatctctaccttgttgtccacttaatttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCA
tttcttcat CT-rich tract
ttaatttcttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctaatttaagccttaaactgtctccctttgttttgttttcaatgcaatcaatttcaacttacaatctctaccttgttgtccacttaatttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - -gccttaa
- - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtccac