Sequence
atgc intronic sequence ATGC exonic sequence...agcttcagtcgcctagtggctagtacagtttacgtataactctagaaacacttgttaagtttttcaataatcttccatttattttttttatcttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
Basic information
species | Glycine max |
transcript | GLYMA16G33080.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 8
agcttcagtcgcctagtggctagtacagtttacgtataactctagaaacacttgttaagtttttcaataatcttccatttattttttttat-cttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
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cacactgcctattaagtcttgacctgtgttttggctttttgtcacaaaca-ttgtttagttacttagttccaatggtataatggcatttatgcacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGTGCTTTCGTGGATTTGGAAAAAACTATATCAGAGAG
upper sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G101791_T02 (Zea mays), 3'ss of exon 8
agcttcagtcgcctagtggctagtacagtttacgtataactctagaaacacttgtta-agtttttcaataatcttccatttattttttttatct-tatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
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aaagaaaattccacgatgcctattg-agtcttgacctgtgttttggc-cttttatcacaaacattggttaattacttaattatggcattcatgtacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTGGAGAAAACTATATCGGAGAG
upper sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 3'ss of exon 8
agcttcagtcgcctagtggctagtacagtttacgtataactctagaaacacttgttaagtttttcaataatcttccatttattt--tttttatcttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
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attttccttcatctgattactatca-attctacatcattatttcatgatagctgttgc-tttgctaatttcgttctaataattacattttaatgaattgcagATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTAGAAAAAACCATTTCAGATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16276814|gb|BI942058.1|BI942058EST: ATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAG ATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCNATT-ATTGATCT
genomic: ATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAGgtatgttgtt ... tcttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGC-ATTTATTGATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacacttgttaagtttttcaataatcttccatttattttttttatcttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
tcttccatttattttt CT-rich tract
ttaagtttttcaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcttcagtcgcctagtggctagtacagtttacgtataactctagaaacacttgttaagtttttcaataatcttccatttattttttttatcttatgcagATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
-gcttcag
- - - - - - - -gtggcta
- - - - - - - - - - - - - - - - - - - - - - - - cacttgt