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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgtttacatctatttatcagcacaggaatagcggataagcacaaggaaaaaaactggtggagagtgcctatcattatatatattcagttattattaattgatgtgtattctgttacattagGAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCAATAA

Basic information

species Glycine max
transcript GLYMA16G29040.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561891|gb|CD487729.1|CD487729
EST:     TCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAG                         GAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGAC
genomic: TCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGgtatgcttgt ... gttacattagGAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctatcattatatatattcagttattattaattgatgtgtattctgttacattagGAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCAATAA
                                         ttctgtt  CT-rich tract
      attatatatattcagt  TA-rich tract