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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctaaaaattttaattttctttggtttatttgctttgtttatcttattgttttttgtgtataactaatatttgttattttctttttacagGTGGGTTCTCTCAG

Basic information

species Glycine max
transcript GLYMA16G27970.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284482|gb|AW597072.1|AW597072
EST:     CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG                         GTGGGTTCTCTCAG
genomic: CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGgtgctaaaaa ... ctttttacagGTGGGTTCTCTCAG
EST: gi|61241638|gb|DN591029.1|DN591029
EST:     CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG                         GTGGGTTCTCTCAG
genomic: CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGgtgctaaaaa ... ctttttacagGTGGGTTCTCTCAG
EST: gi|192326435|gb|FK017707.1|FK017707
EST:     CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG                         GTGGGTTCTCTCAG
genomic: CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGgtgctaaaaa ... ctttttacagGTGGGTTCTCTCAG
EST: gi|193348643|gb|FK317733.1|FK317733
EST:     AGCCAGGGCAG                         GTGGGTTCTCTCAG
genomic: AGCCAGGGCAGgtgctaaaaa ... ctttttacagGTGGGTTCTCTCAG
EST: gi|9900186|gb|BE609154.1|BE609154
EST:     CCTGAATATGGTGATGCAGCAGGCATGTATTCAAGAGCCAGGGCAG                         GTGGGTTCTCT
genomic: CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGgtgctaaaaa ... ctttttacagGTGGGTTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatcttattgttttttgtgtataactaatatttgttattttctttttacagGTGGGTTCTCTCAG
                          aactaat  putative branch site (score: 2)
                                  tttgttattttctttt  CT-rich tract
              ttttttgtgtataact  TA-rich tract