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...attacacatttgaaggcatttattttaaaaacaattttacactttggctaattgtaatttaaaatactgattaagctttatctataaaattatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTCTCCTTCAAGGAGACAGG
species | Glycine max |
transcript | GLYMA16G26920.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTEST: gi|7234248|gb|AW569587.1|AW569587
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATT
EST: GATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTEST: gi|213599562|gb|DB962765.1|DB962765
genomic: GATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTEST: gi|192332268|gb|FK023917.1|FK023917
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTEST: gi|193649445|gb|FK597912.1|FK597912
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATT
EST: AACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTEST: gi|31467884|gb|CD409912.1|CD409912
genomic: AACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATT
EST: GGATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTEST: gi|26268510|gb|CA819573.1|CA819573
genomic: GGATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATT
EST: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAG GCCATGTGCAGGGATAGCCGCTTTGTACCTGG
genomic: TACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGgtaatttccc ... tatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGG
ggctaattgtaatttaaaatactgattaagctttatctataaaattatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTCTCCTTCAAGGAGACAGG
tactgat putative branch site (score: 2)
taatttaaaatactga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacacatttgaaggcatttattttaaaaacaattttacactttggctaattgtaatttaaaatactgattaagctttatctataaaattatttgtcagGCCATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCAACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTCTCCTTCAAGGAGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - ggcattt
- - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - -ctttggc