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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacctcatttaggaaagattccaatgtctgtgttattacctaattacccttttcccccgatgaccataagtgactacctggtcacaaatttttacttgacagCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTG

Basic information

species Glycine max
transcript GLYMA16G26360.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 9
-------------------gtgagttacctcatttaggaaagattccaatgtctgtgttatta--cctaatt--acccttttcccccgatga----ccata-agtgactacctggtcac---aaatttttacttga-cagCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTG
                    |    | || | | |     |   ||||      || ||   |    |||||  ||| ||||| | | |       | ||| ||    || |  |||     | |||||   |||| |||||||||||||||||||| || || ||||| | ||| |||||||||||  |||| |||||  | |||||||||
gtgagttcttgtctgctttctctcctcccccctctcactcactctccatctcaggtatttaaagttttaattgcacctttttctctcaaaagttttctatacagctgttaacatgtcttgtaacattttcctttgagcagCCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttcccccgatgaccataagtgactacctggtcacaaatttttacttgacagCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTG
                                         tttttactt  CT-rich tract
                                    acaaatttttactt  TA-rich tract