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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatctcttgtgaatttcagtcttatgatgattttaattctcatataaaatatatcggttgatcaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG

Basic information

species Glycine max
transcript GLYMA16G25750.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25750.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 9
gtagggatctcttgtgaatttcagtcttatgatgattttaattctcatataaaatatatcggttgatcaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG
                             |  | ||| |        | |||   ||  |  |  | ||   | ||  | | | |        |||   |  || | |||||||||||||| || || ||||| ||| || | ||||| ||||| || |||||||  |||||| | |||||||||||||| || || || ||  
----------------------------gtattcattcttccaagtttgtaatgaattgctatccaccacaaattgcttctgaatcagaaagatgttgatatagGTGTTAAGGAGACCAAGAATTGGGGCAGGCTACAAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGTCGTTGTGAAGTCACTGCGATTCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatatatcggttgatcaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG
           ggttgat  putative branch site (score: 5)
                                      tttctttgt  putative PPT
                             ttttatttgtttcttt  TA-rich tract