1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgactttctaatatctatttcgtgcacccttgttaggcaagagaccagaagtatccttaattgcatcgtatttggagggtagaacctagaggatatactatatgactatgcatattcatactaccattttataattgacaagagagagaaaatgatgtgttttacatttcttgtaccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATCAAACTCTCAGAGAAGAGCTTCAGAGACTTTCTGAAGAATGCGAGAAGC
species | Glycine max |
transcript | GLYMA16G25600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAG GCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATEST: gi|23064117|gb|BU578890.1|BU578890
genomic: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAGgtgactttct ... taccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAAT
EST: GGAAACAGTCAAACCGAGAGTCAACCAGGAGGTCAAGATTACGCAAGCAG GCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATEST: gi|20448522|gb|BQ252646.1|BQ252646
genomic: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAGgtgactttct ... taccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAAT
EST: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAG GCTGAGTGTGAAGAGTTACAAAAGAGGGTGGGAATCGCTGGGGAGGTGAGAEST: gi|254333244|gb|GR850494.1|GR850494
genomic: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAGgtgactttct ... taccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGG-AATCGCTGGG-AGGTGAGA
EST: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAG GCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATEST: gi|22523727|gb|BU082538.1|BU082538
genomic: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAGgtgactttct ... taccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAAT
EST: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAG GCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAAT
genomic: GGAAACAGTCAAACCGAGAGTCAGCCAGGAGGTCAAGATTACGCAAGCAGgtgactttct ... taccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAAT
ttataattgacaagagagagaaaatgatgtgttttacatttcttgtaccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATCAAACTCTCAGAGAAGAGCTTCAGAGACTTTCTGAAGAATGCGAGAAGC
aattgac putative branch site (score: 3)
tttcttgt putative PPT
ttttacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactttctaatatctatttcgtgcacccttgttaggcaagagaccagaagtatccttaattgcatcgtatttggagggtagaacctagaggatatactatatgactatgcatattcatactaccattttataattgacaagagagagaaaatgatgtgttttacatttcttgtaccaaccagGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAATCGCTGGGAGGTGAGAATCAAACTCTCAGAGAAGAGCTTCAGAGACTTTCTGAAGAATGCGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC