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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaattataatagttactcttgtgtgtatccaaattaatattctctggatcatttcaaattgagatataagccattatagattttgttctgttcttgcagATTTGAAGGTATCCGAGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAGAATGCTCCCGCTTCTTCAATAACATTTATTGTTTATGAAAATGTCCTA

Basic information

species Glycine max
transcript GLYMA16G24580.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24580.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 10
-------------tgaattataatagttactcttgtgtgtatccaaattaatattctctggatcatttcaaattgagatataagccattatagattttgttctgttcttgcagATTTGAAGGTATCCGAGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAGAATGCTCCCGCTTCTTCAATAACATTTATTGTTTATGAAAATGTCCTA
              || ||   | | ||   ||| |     |  |  ||| | | ||     |     | ||||    | |   |  || |   || ||  || || |||||| ||||||||| | ||||| |||||||| || || ||  ||| | |  |||| |||   |||||| |||||||||||||| |||| ||||| |||||||| 
gtttgctgtttagggagttgagacacttctccttttagacctttatgttactctcct-----ttccccctaatt----ttttgtcttttct---ttctgggct-tttttgcagTTTTGAAGGTTTTCGAGGCTTTTACAAGGGTATAACTCCAAGCATTCTGAAAAATCTACCCGCTGCTTCAATAACATTTGTTGTGTATGAGAATGTCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatcatttcaaattgagatataagccattatagattttgttctgttcttgcagATTTGAAGGTATCCGAGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAGAATGCTCCCGCTTCTTCAATAACATTTATTGTTTATGAAAATGTCCTA
                                    ttttgttctgttctt  CT-rich tract
                            attatagattttgtt  TA-rich tract