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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtataaaagaaaaccaacaagaatcttactttagcaatgtaaaagtgcttttggaaactatcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG

Basic information

species Glycine max
transcript GLYMA16G23840.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G085427_T02 (Zea mays), 3'ss of exon 9
---------gtgagtataaaagaaaaccaacaagaatcttact--ttagcaatgtaaaagtgcttttggaaactatcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
          ||  | |         |  |   |  |  | ||  |   |||| |   ||   |||     |  || | ||  |  | |||| | | | | | ||||| | |||||||| || || ||||| ||| | ||  || ||||||| ||||||||  |  |||||||||||||||| ||||||||||| |||| ||| |
aacttttctttgtatctggtttgggtctgagttgttttgttctgttctccaatctttgagcaattt----gaacattacatggtgct-ttttctcctcttatcagGATGACCATAATCCTCATCTAGAGCTCACATTAAGCTCTAGAAAGAAAATATCATCTGTGCTAGAACATCTAAACCGAAAATGGGGTAACTCAAACATCG

upper sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G152319_T01 (Zea mays), 3'ss of exon 9
---------gtgagtataaaagaaaaccaacaagaatc--ttactttagcaatgtaaaagtgcttttggaaactatcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
          |   | |||  ||         ||      | | ||   |||| |   ||   |||     |  || | || ||   ||||| | | | | | ||||| | |||||||| ||  | ||||| ||| | ||  || | ||||| ||||||||  |  |||||||||||||||| ||||||||||| |||| ||| |
cgcaaacttttctttgtaattgatttggggtcagttctgttcagttctccaatctgtgagcaattt----gaacattacatgttgc-cttttctcctcttatcagGATGACCATAATCCTCATTTAGAGCTCACATTAAGCTCTAGGAAGAAAATATCATCTGTGCTAGAACATCTAAACCGAAAATGGGGTAACTCAAACATCG

upper sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 8
lower sequence: AT2G36960.3 (Arabidopsis thaliana), 3'ss of exon 9
gtgagtataaaagaaaaccaacaagaatctta-ctttagcaatgtaaaagtgcttttggaaactatcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
|| ||  | ||| |  |   | |   ||   | |  ||    | | | |       ||||   |    |    ||  |  ||    |  |   |||||||||| ||||| || || || ||||| ||||||| ||| ||||||||||||||  |  | |||||||| || || |||||||| |  |||||    |
gtaagcttcaaataggaattatactgattggagcaataattttctgagacatgaaatggagcttgatctg---ttaacacttaacactttaacagGATAAGCACAATCCGCATCTTGAACTTACTCTTAGTAATCGCAAGAAGATATCATCTGTACTTGAACATCTCAATCGCAAATGGGGAAGCTCAAGTTGTG

upper sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 8
gtgagtataaaagaaaacca---------------acaagaatcttactttagca-atgtaaaagtgctt-ttggaaact---atcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
|| |||| | ||| ||| ||                 |  | |     |||| |  ||| | |||   |  |  |||| |   |  | || |||   |  |  ||   ||  |||||||||||||||| ||||||||||||||  | |||||||| || || ||||||||| |||| |||||||| |  || |||||||| |||||  ||||||
gtaagtagagaaggaaatcattttagttgttccatgtagaattggagttttaacggatggataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtaaaagtgcttttggaaactatcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG
                      ctatcatatctttttc  CT-rich tract
                       tatcatatctttttct  TA-rich tract