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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtttttaaagaaagtgttttgatgaatatatatgacttcaaatgattttgtctgctttgcaagagttttctctactgaagttgcatgtttgcagGCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCTTTGCTTTTAAGA

Basic information

species Glycine max
transcript GLYMA16G19580.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207796312|gb|GD771453.1|GD771453
EST:     TACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCG                         GCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCT
genomic: TACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCGgtatgagttt ... atgtttgcagGCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCT
EST: gi|13479340|gb|BG508683.1|BG508683
EST:     TACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCG                         GCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCT
genomic: TACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCGgtatgagttt ... atgtttgcagGCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgattttgtctgctttgcaagagttttctctactgaagttgcatgtttgcagGCAGAAAATATTGTTACTCTTTATGATGTTCCCAACATCTGGCACATTCCTTTGCTTTTAAGA
     attttgt  TA-rich tract